Affiliated projects/websites
Cannabis Onderzoek
fMRI analysis software
SPM
FSL
AFNI
UMCU/UU analysis tools (matlab)
R2Agui - tool to convert Philips PAR/REC raw data to Nifti 1.1 or Analyze
format
Design Magic - tool with graphical interface to check GLM design orhogonality
spm2 batch - Batch engine to automize complete spm2 analyses
Other fMRI analysis tools (matlab)
ArtRepair - toolbox for repairing fMRI datasets, eg for movement (U
Stanford)
AnatomyToolbox - Toolbox for defining ROIs using post-mortem cytoarchitecture
(Forsch.Zentr. Jülich)
WFU Pickatlas - SPM2/5 based brain atlas developed at Wake Forest University,
quite handy for SPM based ROI analysis
Useful resources for working with fMRI
Matlab 'getting' started guide - learn matlab programming in only a few chapters!
Jerne VOI database - provides access to a database of brain volumes in MNI space,
useful for ROI analyses in SPM. Based on BrainMap
database.
fMRI design efficiency - Advice and background on how to design good fMRI
experiments
MR-tip - Everything you want to know about MR physics (MR
keyword search)
Linux Tutorials
Getting started with Linux - Beginners lessons in using linux, especially Lesson
4 & 6 are handy.
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